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The progress on the projects of
full-length cDNA is introduced and updated in the NCBI (click here).
Human and mouse full-length cDNAs represent the biggest collection and
therefore serve as templates to organize to the chicken ESTs. The
experimental works are expected to fully obtain the corresponding
full-length cDNAs for chicken. The human and mouse templates are from
three databases:
NEDO,
RIKEN
and
MGC. The alignment outputs of the chicken ESTs on
the templates are available for display in tables below. The list of the
reported chicken genes consists of all chicken genes confirmed by proofs
in publications. The known chicken full-length cDNA table provides the
experimentally verified chicken full-length cDNAs in public database. It
contains more than 2000 sequences. A majority of them reported in this
paper:
Full-length cDNAs
from chicken bursal lymphocytes to facilitate gene function analysis.
Genome Biology, 2004, 6-R6.
A part of the above templates have
corresponding human and mouse genes in the EMBL database. We identified
the human and mouse genes using the alignment positions of the templates
in the EMBL. The alignment positions are shown here. By searching the
orthologous gene tables for human-chicken
and mouse-chicken, the full-length templates could be linked to chicken
genes in the EMBL. We made tables to contain the full-length templates,
corresponding human or mouse genes, and orthologous EMBL chicken genes.
The tables are available for download here. These files from the EMBL are
supplementary to the above method on the basis of EST alignment.
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